A program written in C that can perform genomic scans for recent selective sweeps selection while controlling for background selection and mutation rate variation.<\/p>\n\n\n\n
Please cite the following manuscript if using this software:<\/strong> On a UNIX system, extract the compressed files using the command Software history<\/strong> A program written in C that can perform genomic scans for recent selective sweeps selection while controlling for background selection […]<\/p>\n","protected":false},"author":101,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"normal-width-container","site-content-style":"boxed","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","theme-transparent-header-meta":"default","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"set","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"class_list":["post-124","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/124","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/users\/101"}],"replies":[{"embeddable":true,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/comments?post=124"}],"version-history":[{"count":2,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/124\/revisions"}],"predecessor-version":[{"id":126,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/124\/revisions\/126"}],"wp:attachment":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/media?parent=124"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}
M DeGiorgio, CD Huber, MH Hubisz, I Hellmann, R Nielsen (2016) SweepFinder2<\/em>: increased sensitivity, robustness, and flexibility. Bioinformatics<\/em> 32:1895-1897.<\/p>\n\n\n\n[Click to download manual<\/a>]
[Click to download software<\/a>]\n\n\n\n
tar -xzvf SF2.tar.gz
Change directory to SF2 using a command such as
cd SF2
Compile SweepFinder2<\/em> with the command
make
The SweepFinder2<\/em> executable will be located in the SF2 directory<\/p>\n\n\n\n
May 27, 2015 – Uploaded version 1.0 of the software and manual
October 6, 2015 – Updated software and manual
December 15, 2015 – Fixed bug that caused instability in calculation next to test site
July 29, 2016 – Updated manual, stating condition on T and N1 when using B-values
September 16, 2016 – Fixed bug that caused program to halt due to a numerical precision issue<\/p>\n","protected":false},"excerpt":{"rendered":"