{"id":132,"date":"2026-01-26T19:13:52","date_gmt":"2026-01-26T19:13:52","guid":{"rendered":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/?page_id=132"},"modified":"2026-01-26T19:14:17","modified_gmt":"2026-01-26T19:14:17","slug":"calcabs","status":"publish","type":"page","link":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/calcabs\/","title":{"rendered":"CalcABS"},"content":{"rendered":"\n<p>A Python script that computes the ancestral branch statistic (ABS) for detecting ancestral selective sweeps of Cheng&nbsp;<em>et al<\/em>. (2017).<\/p>\n\n\n\n<p><strong>Please cite the following manuscript if using this software:<\/strong><br>X Cheng, C Xu, M DeGiorgio (2017) Fast and robust detection of ancestral selective sweeps.&nbsp;<em>Molecular Ecology<\/em>&nbsp;26:6871-6891<\/p>\n\n\n\n[<a href=\"https:\/\/degiorgiogroup.fau.edu\/CalcABS_manual.pdf\">Click to download manual<\/a>]<br>[<a href=\"https:\/\/degiorgiogroup.fau.edu\/CalcABS.tar.gz\">Click to download software<\/a>]\n\n\n\n<p>On a UNIX system, extract the compressed files using the command<br>tar -xzvf CalcABS.tar.gz<br>Change directory to&nbsp;CalcABS&nbsp;using a command such as<br>cd CalcABS<br>The&nbsp;CalcABS.py&nbsp;script will be located in the&nbsp;CalcABS&nbsp;directory<\/p>\n\n\n\n<p><strong>Software history<\/strong><br>December 4, 2017 &#8211; Modified software and manual<br>October 26, 2016 &#8211; Uploaded version 1.0 of the software and manual<\/p>\n","protected":false},"excerpt":{"rendered":"<p>A Python script that computes the ancestral branch statistic (ABS) for detecting ancestral selective sweeps of Cheng&nbsp;et al. (2017). Please [&hellip;]<\/p>\n","protected":false},"author":101,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"normal-width-container","site-content-style":"boxed","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","theme-transparent-header-meta":"default","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"set","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"class_list":["post-132","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/132","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/users\/101"}],"replies":[{"embeddable":true,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/comments?post=132"}],"version-history":[{"count":2,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/132\/revisions"}],"predecessor-version":[{"id":134,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/132\/revisions\/134"}],"wp:attachment":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/media?parent=132"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}