{"id":156,"date":"2026-01-26T19:25:36","date_gmt":"2026-01-26T19:25:36","guid":{"rendered":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/?page_id=156"},"modified":"2026-02-16T19:43:24","modified_gmt":"2026-02-16T19:43:24","slug":"surfdawave-sweep-inference-using-regularized-fda-with-wavelets","status":"publish","type":"page","link":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/surfdawave-sweep-inference-using-regularized-fda-with-wavelets\/","title":{"rendered":"SURFDAWave (Sweep inference Using Regularized FDA with Wavelets)"},"content":{"rendered":"\n

An R program that implements the classifier and predictor SURFDAWave<\/em> of Mughal et al<\/em>. (2019) for identifying adaptive targets and learning their evolutionary parameters using the spatial distribution of summary statistics around a test site.<\/p>\n\n\n\n

Results of genome scans for selective sweeps using SURFDAWave<\/em> as applied to seven 1000 Genomes Project populations in Mughal et al<\/em>. (2019).
[Click to download scan results (238 MB download)<\/a>]\n\n\n\n

Please cite the following manuscript if using this software:<\/strong>
MR Mughal, H Koch, J Huang, F Chiaromonte, M DeGiorgio (2019) Learning the properties of adaptive regions with functional data analysis. bioRxiv<\/em> doi.org\/10.1101\/834010.<\/p>\n\n\n\n[Click to download manual<\/a>]
[Click to download software<\/a>]\n\n\n\n

On a UNIX system, extract the compressed files using the command
tar -xzvf surfdawave.tar.gz
Change directory to using a command such as
cd surfdawave
The FDAclass.R classifier and the FDApred.R predictor scripts will be located in the surfdawave directory<\/p>\n\n\n\n

Software history<\/strong>
November 6, 2019 – Uploaded version 1.0 of the software and manual<\/p>\n","protected":false},"excerpt":{"rendered":"

An R program that implements the classifier and predictor SURFDAWave of Mughal et al. (2019) for identifying adaptive targets and learning their evolutionary […]<\/p>\n","protected":false},"author":101,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"normal-width-container","site-content-style":"boxed","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","theme-transparent-header-meta":"default","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"set","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"class_list":["post-156","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/156","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/users\/101"}],"replies":[{"embeddable":true,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/comments?post=156"}],"version-history":[{"count":4,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/156\/revisions"}],"predecessor-version":[{"id":206,"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/pages\/156\/revisions\/206"}],"wp:attachment":[{"href":"https:\/\/faculty.eng.fau.edu\/degiorgiogroup\/wp-json\/wp\/v2\/media?parent=156"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}