{"id":86,"date":"2020-05-14T20:08:55","date_gmt":"2020-05-14T20:08:55","guid":{"rendered":"http:\/\/faculty.eng.fau.edu\/nayak\/?page_id=86"},"modified":"2022-07-14T15:49:16","modified_gmt":"2022-07-14T15:49:16","slug":"publications","status":"publish","type":"page","link":"https:\/\/faculty.eng.fau.edu\/nayak\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<p>&nbsp;<\/p>\n<h3><strong><span style=\"text-decoration: underline\">Journal Publications<\/span><\/strong><\/h3>\n<ul>\n<li>M. McFarland, <strong>A.R. Nayak<\/strong>, N. Stockley, M. Twardowski and J. Sullivan and, \u201cEffects of orientation on light absorption and scattering in colonial phytoplankton\u201d, In Press, Frontiers in Marine Science.\n<\/ul>\n<ul>\n<li><strong>A.R. Nayak<\/strong> and M. Twardowski, \u201cBreaking news for the ocean\u2019s carbon budget\u201d, Science, 367 (6479), 738-739. (Invited perspective).\u00a0 <a href=\"https:\/\/doi.org\/10.1126\/science.aba7109\">https:\/\/doi.org\/10.1126\/science.aba7109<\/a><\/li>\n<\/ul>\n<ul>\n<li>T.S. Moore, J. Churnside, J. Sullivan, M. Twardowski, <strong>A.R. Nayak<\/strong>, M. McFarland, N. Stockley, R. Gould, T. Johengen and S. Ruberg, \u201cVertical distributions of blooming cyanobacteria populations in a freshwater lake from LIDAR observations\u201d, 2019. Remote Sensing of Environment, \u00a0<i>225<\/i>, 347-367.<br \/>\n<a href=\"https:\/\/doi.org\/10.1016\/j.rse.2019.02.025\">https:\/\/doi.org\/10.1016\/j.rse.2019.02.025<\/a><\/li>\n<\/ul>\n<ul>\n<li><strong>A.R. Nayak<\/strong>, M. McFarland, J. Sullivan and M. Twardowski, \u201cEvidence of ubiquitous preferential particle orientation in representative oceanic shear flows\u201d, 2018. Limnology &amp; Oceanography, 63(1), 122-143.\u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 \u00a0 <a href=\"https:\/\/doi.org\/10.1002\/lno.10618\" target=\"_blank\" rel=\"noopener\">https:\/\/doi.org\/10.1002\/lno.10618<\/a><\/li>\n<\/ul>\n<ul>\n<li>T.S. Moore, C.B. Mouw, J. Sullivan, M. Twardowski, A. Burtner, A. Ciochetto, M. McFarland,<strong> A.R. Nayak<\/strong>, D. Paladino, N. Stockley, T. Johengen, A. Yu, S. Ruberg and A. Weidemann, \u201cBio-optical properties of cyanobacteria blooms in western Lake Erie\u201d, 2017. Frontiers in Marine Science, 4, 300.\u00a0 \u00a0<a href=\"https:\/\/doi.org\/10.3389\/fmars.2017.00300\" target=\"_blank\" rel=\"noopener\">https:\/\/doi.org\/10.3389\/fmars.2017.00300<\/a><\/li>\n<\/ul>\n<ul>\n<li><strong>A.R. Nayak<\/strong>, C. Li, B.Kiani, and J. Katz, \u201cOn the wave and current interaction with a rippled seabed in the coastal ocean bottom boundary layer\u201d, 2015. Journal of Geophysical Research: Oceans, 120, 4595-4624.<br \/>\n<a href=\"https:\/\/doi.org\/10.1002\/2014jc010606\">\u00a0https:\/\/doi.org\/10.1002\/2014jc010606<\/a><\/li>\n<\/ul>\n<ul>\n<li>S. Talapatra, J. Hong, M. McFarland, <strong>A.R. Nayak<\/strong>, C. Zhang, J. Katz, J. Sullivan, M. Twardowski, J. Rines, P. Donaghay, \u201cCharacterization of biophysical interactions in the water column using in situ digital holography\u201d, 2013. Marine Ecology Progress Series, 473, 29-51.<br \/>\n<a href=\"https:\/\/doi.org\/10.3354\/meps10049\">https:\/\/doi.org\/10.3354\/meps10049<\/a><\/li>\n<\/ul>\n<ul>\n<li>E.E. Hackett, L. Luznik, <strong>A. R. Nayak<\/strong>, J. Katz, and T. R. Osborn, \u201cField measurements of turbulence at an unstable interface between current and wave bottom boundary layers \u201c, 2011. Journal of Geophysical Research: Oceans, 116, C02022.<br \/>\n<a href=\"https:\/\/doi.org\/10.1029\/2010JC006138\">https:\/\/doi.org\/10.1029\/2010JC006138<\/a><\/li>\n<li style=\"list-style-type: none\"><\/li>\n<\/ul>\n<h3><span style=\"text-decoration: underline\"><strong>In Review<\/strong><\/span><\/h3>\n<ul>\n<li>A. T. Greer, J. C. Lehrter, B. M. Binder, <strong>A. R. Nayak<\/strong>, <strong>R. Barua*<\/strong>, A.E. Rice, J. Cohen, M. McFarland, A. Hagemeyer, N.D. Stockley, K.M. Boswell, I. Shulman, S. deRada, B. Penta, &#8220;High-resolution sampling of a broad marine life size spectrum in relation to shelf biophysical characteristics&#8221;, Submitted to Frontiers in Marine Science in March 2020.<\/li>\n<\/ul>\n<ul>\n<li><strong>T. McKenzie*<\/strong>, M. Twardowski, N. Briggs, <strong>A.R. Nayak<\/strong>, K. Boswell and F. Dalgleish, \u201cMulti-scale characterization of mesopelagic organisms using a three-dimensional imaging lidar\u201d, Submitted to Frontiers in Marine Science.<\/li>\n<\/ul>\n<ul>\n<li>B. Guo, <strong>L. Nyman*<\/strong>, <strong>A.R. Nayak<\/strong>, D. Milmore, M. McFarland, M. Twardowski,J. Yu and J. Hong, &#8220;Automated plankton classification from holographic imagery with deep convolutional neural networks&#8221; Submitted to Limnology &amp; Oceanography: Methods in May 2020.<\/li>\n<\/ul>\n<ul>\n<li><strong>A.R. Nayak<\/strong>, E. Malkiel, M. McFarland, M. Twardowski and J. Sullivan, \u201cA review of holography in the aquatic sciences: In situ characterization of particles, plankton and small scale biophysical interactions\u201d. Submitted to Frontiers in Marine Science.<\/li>\n<\/ul>\n<h3><span style=\"text-decoration: underline\"><strong>Conference Proceedings<\/strong><\/span><\/h3>\n<ul>\n<li><strong>A.R. Nayak<\/strong>, M. McFarland, M. Twardowski, T. Moore, J. Sullivan and F. Dalgleish. \u201cUsing digital holography to characterize thin layers and harmful algal blooms in aquatic environments\u201d, 2019. In OSA Digital Holography &amp; Three-dimensional Imaging Meeting, pp.Th4A-4. Optical Society of America. <a href=\"https:\/\/doi.org\/10.1364\/DH.2019.Th4A.4\">\u00a0https:\/\/doi.org\/10.1364\/DH.2019.Th4A.4<\/a><\/li>\n<\/ul>\n<ul>\n<li><strong>A.R. Nayak<\/strong>, M. McFarland, M. Twardowski and J. Sullivan, \u201cOn plankton distributions and biophysical interactions in diverse aquatic environments\u201d, April 17-18, 2018. SPIE Ocean Sensing &amp; Monitoring X, Apr 16-17, 2018. Orlando, Florida, USA. <a href=\"https:\/\/doi.org\/10.1117\/12.2309798\">https:\/\/doi.org\/10.1117\/12.2309798<\/a><\/li>\n<\/ul>\n<ul>\n<li><strong>A.R. Nayak<\/strong>, C. Li, B. Kiani and J. Katz, \u201cWave-current and bottom topographical interactions in the coastal ocean bottom boundary layer\u201d, 10th International Symposium on Particle Image Velocimetry, July 1-3, 2013. Delft, Netherlands. <a href=\"https:\/\/doi.org\/10.1117\/12.920570\">https:\/\/doi.org\/10.1117\/12.920570<\/a><\/li>\n<\/ul>\n<ul>\n<li>S. Talapatra, J. Sullivan, J. Katz, M. Twardowski, H. Czerski, P. Donaghay, J. Hong, J. Rines, M. McFarland, <strong>A.R. Nayak<\/strong> and C. Zhang. \u201cApplication of in-situ digital holography in the study of particle, organisms and bubbles within their natural environment\u201d, 2012. SPIE Ocean Sensing &amp; Monitoring IV, 8372, 837205.\u00a0 <a href=\"https:\/\/doi.org\/10.1117\/12.920570\">https:\/\/doi.org\/10.1117\/12.920570<\/a><\/li>\n<\/ul>\n<p>* indicates contribution by graduate students or postdocs in our lab.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>&nbsp; Journal Publications M. McFarland, A.R. Nayak, N. Stockley, M. Twardowski and J. Sullivan and, \u201cEffects of orientation on light absorption and scattering in colonial phytoplankton\u201d, In Press, Frontiers in Marine Science. A.R. Nayak and M. Twardowski, \u201cBreaking news for &hellip; <a href=\"https:\/\/faculty.eng.fau.edu\/nayak\/publications\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":84,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-86","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/faculty.eng.fau.edu\/nayak\/wp-json\/wp\/v2\/pages\/86","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/faculty.eng.fau.edu\/nayak\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/faculty.eng.fau.edu\/nayak\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/faculty.eng.fau.edu\/nayak\/wp-json\/wp\/v2\/users\/84"}],"replies":[{"embeddable":true,"href":"https:\/\/faculty.eng.fau.edu\/nayak\/wp-json\/wp\/v2\/comments?post=86"}],"version-history":[{"count":25,"href":"https:\/\/faculty.eng.fau.edu\/nayak\/wp-json\/wp\/v2\/pages\/86\/revisions"}],"predecessor-version":[{"id":241,"href":"https:\/\/faculty.eng.fau.edu\/nayak\/wp-json\/wp\/v2\/pages\/86\/revisions\/241"}],"wp:attachment":[{"href":"https:\/\/faculty.eng.fau.edu\/nayak\/wp-json\/wp\/v2\/media?parent=86"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}