My course BME 5742 Biosystems Modeling and Control (taught in Fall 2010) has 30 lecture videos (1 hour and 20 minutes each) that are posted in www.vimeo.com/album/1663456.  For a table of contents of the videos click here. In the table of contents all lectures that involve hands-on Matlab and Simulink tutorials are marked in red.

The latest set of pdf lecture notes (as of Spring 2015) is attached below:

Zvi Roth BME 5742 Lectures Spring 2015 pdf zipped